Finance Information & Training

IU & IU Health Clinical Research Billing Compliance Training

The OCR has scheduled an educational presentation on the Indiana University & IU Health OnCore Research Billing Notification process and other clinical research billing compliance requirements.

This presentation will provide education on the IU Health OnCore Research Billing Notification process and other clinical research billing compliance requirements.  This presentation should be considered required training for anyone in a study coordinator role and will likely provide new information even for those actively using these processes.

Two training dates have been scheduled. These will be identical presentations. To register for this training, please click on the registration link below for the date that fits your schedule.

IU & IU Health Clinical Research Billing Compliance Training (choose 1)

After registering, you will receive a confirmation email containing information about joining the meeting. If you have questions, please contact our team at

OCR Financial Compliance Open Office Hours

Every Tuesday 11 am -12 noon

Join us for online open office hours every Tuesday from 11am – 12pm.  Financial Compliance staff will be available to answer questions related to clinical research finance topics including, but not limited to:  

  • OCR Intake Process
  • Coverage Analysis Study Reviews
  • Research Billing Requirements
  • Advarra Participant Payments

No registration needed!  Just click here to join the call. 

Clinical Research Billing

Clinical Research Billing Compliance at IU

A Team Effort

Clinical research billing compliance is complex and requires collaboration for continual improvement. Indiana University (IU) and Indiana University Health (IU Health) partner to make clinical research studies available to patients from our community as well as from many other parts of the state and country. As partners, IU and IU Health have a shared responsibility to ensure compliant billing for all patients participating in clinical research. Previously, IU research staff were asked to submit a paper Grant Charge Form (GCF), which notified IU Health Revenue Cycle Services of study procedures occurring within an IU Health facility that should be invoiced to a research study account. This process did not provide the complete billing plan and led to confusion surrounding charge entry for these procedures. Together, IU and IU Health collaborated to create a more robust process, which has been in effect for all new projects since December 1, 2020. The OnCore Research Billing Notification process uses data entered into OnCore (IU and IU Health’s chosen Clinical Research Management System) to communicate the information required for compliant billing for all included studies and participants.


So why the change?

Compliant research billing is not as simple as ensuring that items and services budgeted to be paid by the study sponsor are directed to the study account. Certainly, this is one important piece of the puzzle. However, the Centers for Medicaid & Medicare Services (CMS) has set forth guidance on when protocol directed billable procedures would qualify for coverage by CMS. Those procedures must be flagged to ensure claims go out the door with required codes and modifiers:

  • The Condition Code 30 tells CMS that this is a patient participating in a Qualifying Clinical Trial.
  • The NCT Number, required on claims since 2014, allows them to find more information on the trial.
  • The 6 diagnosis code is required on claims containing procedures completed as part of a Qualifying Clinical Trial.
  • And the Q modifiers, required only on outpatient claims, identify the individual items/services as Q0 (Investigational clinical service provided in a qualified clinical research trial) or Q1 (Routine clinical service provided in a qualified clinical research trial).


Penalty for Non-Compliance?

Providing a positive experience for our research participants is important to all of us, and accurate billing for services provided during their participation is a big part of this. But, there can be more severe consequences for non-compliant clinical research billing. Submitting claims without any of the required research codes and modifiers is a violation of 31 U.S. Code § 3729 – False Claims. False Claims charges, followed by audits from CMS have resulted in millions of dollars in fines for some academic research institutions. The dollar amount of these fines is calculated in accordance with the False Claims Act including $5,000-$10,000 (adjusted for inflation) per claim, along with three times the amount of the claim.

Moreover, the potential fallout from institutions implicated in False Claims Act audits has been presented at national conferences. Some institutions have reported difficulty when applying for federally funded grants, including NIH.

CMS can also suspend and/or revoke any hospital network’s enrollment in the Medicare program for submitting claims which include false or misleading information in accordance with 42 CFR 424.535. Not including research codes and modifiers in research claims can be interpreted as providing false or misleading information and needs to be avoided at all costs.

While the primary focus of a Coverage Analysis is compliance with the rules and guidelines established by CMS, IU Health includes these codes and modifiers on claims to all third-party payers unless explicitly instructed to exclude them. Specific policies and consequences for non-compliance will vary by payer. Contracts between commercial insurers and hospital networks require the use of proper codes when submitting claims, and often follow the same general guidelines set forth by CMS. Failure to follow the contractual agreement could result in the commercial insurer voiding the contract with the hospital network.


IU and IU Health Response

Since 2018, the centralized Coverage Analysis Team has been providing a complete and consistent research billing review for clinical research studies opened by Indiana University investigators. This team works with study teams to document and justify the billing plan for each study directly in OnCore.

In collaboration, IU Health Corporate Compliance is completing audits that include a detailed review of the research subject’s billing encounters as compared to the Cerner medical record, the Coverage Analysis, and the tracked patient calendar in OnCore. This audit ensures that all clinical research billing processes and procedures are being followed by all parties and provides a feedback loop for continual process improvement.


Moving Forward

Questions about Coverage Analysis or Clinical Research Billing Compliance can be directed to



DHHS & CMS. (2008). CMS Manual System: Pub 100-04 Medicare Claims Processing: Transmittal 1418. Change Request 5805. Retrieved from

DHHS & CMS. (2014). CMS Manual System: Pub 100-04 Medicare Claims Processing: Transmittal 2998. Change Request 8693. Retrieved from

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